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dc.contributor.advisorGümüşderelioğlu, Menemşe
dc.contributor.authorİlhan, Zeynep
dc.date.accessioned2024-10-14T12:38:10Z
dc.date.issued2024
dc.date.submitted2024-08-09
dc.identifier.urihttps://hdl.handle.net/11655/35924
dc.description.abstractThe aim of the study is to investigate the effects of poly(butylenadipate-co-terephthalate) (PBAT) based fibers and fibrous matrices with nanotopographic surface properties on the mechanotransduction mechanism and cell behaviour of stem cells. Nanotopographic fibers were produced with electrospinning method supported by phase separation mechanisms. Followed by the physical, chemical and morphological structures of the matrices were characterised. The interaction of human umbilical cord mesenchymal stem cells (UC-MSCs) with matrices and single fibers was studied in cell culture. Cell culture studies investigating the mechanotransduction mechanism, ε-polycaprolactone (PCL) nanotopographic single fibers were compared with PBAT single fibers to determine the effect of polymer chemical structure as well as nanotopography. Four different phase separation mechanisms, non-solvent-induced phase separation (NIPS), vapor-induced phase separation (VIPS), breath figure (BF), and thermally induced phase separation (TIPS) mechanisms, were applied to create roughness on the fiber surfaces. Tetrahydrofuran (THF), dichloromethane (DCM), 1,1,1,3,3,3-hexafluoro-2-propanol (HFIP) were selected as good solvents and dimethylsulfoxide (DMSO) was chosen as a non-solvent for PBAT. In the binary composition, THF was paired with DMSO and DCM was paired with HFIP. For the THF/DMSO group, the polymer concentration was 12% (w/v) and the solvent volume ratio was 9/1 (v/v), while for the DCM/HFIP group, the polymer concentration was 10% (w/v) and the solvent volume ratio was 8/2 (v/v). It was determined by scanning electron microscopy (SEM) that the fibers were produced as a result of these compositions had porous, wrinkled and grooved morphology, while the fibers in the groups using HFIP solvent had smooth morphology. The average fiber diameters of these combinations were calculated from the SEM images and ranged from 2141 ± 860 nm and 867 ± 487 nm, respectively for random and aligned formulations. The biological performances of PBAT tissue scaffolds with two different surface nanotopographies (THF/DMSO-crumpled and HFIP-smooth) were investigated for 14 days. Cell culture studies, the morphology, adhesion and proliferation behaviours of UC-MSCs on these scaffolds were investigated by SEM, F-actin/DAPI immunofluorescence staining (ICC), Alizarin Red staining and MTT analysis. The result of this investigation show that the adhesion-spread behaviour of the cells on the wrinkled nanotopography. These scaffolds was more mineralisation. In addition, the results of RT-PCR analysis showed that the relative gene expressions for RUNX2, OPN and OCN, which are markers representing osteogenic differentiation, reached a statistically higher expression level in these scaffolds. Within the scope of mechanotransduction studies, PBAT and PCL single fibers were patterned on their basement membranes by phase separation assisted electrospinning method. The response of UC-MSCs to nanotopographies of polymeric single fibers was revealed by F-actin/DAPI, fibronectin and integrin ICC staining. ICC staining was performed to visualise YAP (Yes-associated protein), which plays an important role in the mechanotransduction mechanism. ImageJ-FIJI software was used to obtain numerical data for nucleus and cytoplasm aspect ratios, YAP signal ratios and integrin-fibronectin areas from the fluorescence images of the samples. The results of the analyses were statistically compared. As a result, the prominence of lamellipodia structures due to strong cell-surface interaction, the increase in the amount of integrin and fibronectin, and especially the transition of YAP from the cytoplasm to the nucleus were clearly observed on PBAT-based wrinkled nanotopographic surfaces. This was supported by actin staining and larger aspect ratio of the nucleus. In the smooth fibers used in the study, the cells showed less elongation and spreading, the cytoskeleton was mostly localised around the nucleus. The results emphasize that, the morphological changes and the synergistic effect of chemical structure induce many cellular functions such as cell adhesion and spreading. The most effective polymeric structure on cellular activities and mechanotransduction was determined to be PBAT, and the best morphology was determined to be wrinkled nanotopography. It is expected that the findings obtained will contribute to the design and production of 3D nanofibrous scaffolds that can be used in clinical studies, thus contributing to the relevant literature and applications.tr_TR
dc.description.abstractThe aim of the study is to investigate the effects of poly(butylenadipate-co-terephthalate) (PBAT) based fibers and fibrous matrices with nanotopographic surface properties on the mechanotransduction mechanism and cell behaviour of stem cells. Nanotopographic fibers were produced with electrospinning method supported by phase separation mechanisms. Followed by the physical, chemical and morphological structures of the matrices were characterised. The interaction of human umbilical cord mesenchymal stem cells (UC-MSCs) with matrices and single fibers was studied in cell culture. Cell culture studies investigating the mechanotransduction mechanism, ε-polycaprolactone (PCL) nanotopographic single fibers were compared with PBAT single fibers to determine the effect of polymer chemical structure as well as nanotopography. Four different phase separation mechanisms, non-solvent-induced phase separation (NIPS), vapor-induced phase separation (VIPS), breath figure (BF), and thermally induced phase separation (TIPS) mechanisms, were applied to create roughness on the fiber surfaces. Tetrahydrofuran (THF), dichloromethane (DCM), 1,1,1,3,3,3-hexafluoro-2-propanol (HFIP) were selected as good solvents and dimethylsulfoxide (DMSO) was chosen as a non-solvent for PBAT. In the binary composition, THF was paired with DMSO and DCM was paired with HFIP. For the THF/DMSO group, the polymer concentration was 12% (w/v) and the solvent volume ratio was 9/1 (v/v), while for the DCM/HFIP group, the polymer concentration was 10% (w/v) and the solvent volume ratio was 8/2 (v/v). It was determined by scanning electron microscopy (SEM) that the fibers were produced as a result of these compositions had porous, wrinkled and grooved morphology, while the fibers in the groups using HFIP solvent had smooth morphology. The average fiber diameters of these combinations were calculated from the SEM images and ranged from 2141 ± 860 nm and 867 ± 487 nm, respectively for random and aligned formulations. The biological performances of PBAT tissue scaffolds with two different surface nanotopographies (THF/DMSO-crumpled and HFIP-smooth) were investigated for 14 days. Cell culture studies, the morphology, adhesion and proliferation behaviours of UC-MSCs on these scaffolds were investigated by SEM, F-actin/DAPI immunofluorescence staining (ICC), Alizarin Red staining and MTT analysis. The result of this investigation show that the adhesion-spread behaviour of the cells on the wrinkled nanotopography. These scaffolds was more mineralisation. In addition, the results of RT-PCR analysis showed that the relative gene expressions for RUNX2, OPN and OCN, which are markers representing osteogenic differentiation, reached a statistically higher expression level in these scaffolds. Within the scope of mechanotransduction studies, PBAT and PCL single fibers were patterned on their basement membranes by phase separation assisted electrospinning method. The response of UC-MSCs to nanotopographies of polymeric single fibers was revealed by F-actin/DAPI, fibronectin and integrin ICC staining. ICC staining was performed to visualise YAP (Yes-associated protein), which plays an important role in the mechanotransduction mechanism. ImageJ-FIJI software was used to obtain numerical data for nucleus and cytoplasm aspect ratios, YAP signal ratios and integrin-fibronectin areas from the fluorescence images of the samples. The results of the analyses were statistically compared. As a result, the prominence of lamellipodia structures due to strong cell-surface interaction, the increase in the amount of integrin and fibronectin, and especially the transition of YAP from the cytoplasm to the nucleus were clearly observed on PBAT-based wrinkled nanotopographic surfaces. This was supported by actin staining and larger aspect ratio of the nucleus. In the smooth fibers used in the study, the cells showed less elongation and spreading, the cytoskeleton was mostly localised around the nucleus. The results emphasize that, the morphological changes and the synergistic effect of chemical structure induce many cellular functions such as cell adhesion and spreading. The most effective polymeric structure on cellular activities and mechanotransduction was determined to be PBAT, and the best morphology was determined to be wrinkled nanotopography. It is expected that the findings obtained will contribute to the design and production of 3D nanofibrous scaffolds that can be used in clinical studies, thus contributing to the relevant literature and applications.tr_TR
dc.language.isoturtr_TR
dc.publisherFen Bilimleri Enstitüsütr_TR
dc.rightsinfo:eu-repo/semantics/openAccesstr_TR
dc.subjectElektroeğirme
dc.subjectε-polikaprolakton (PCL)
dc.subjectPoli(bütilenadipat-ko-tereftalat) (PBAT)
dc.subjectNanotopografi
dc.subjectMekanotransdüksiyon
dc.subjectİnsan göbek kordonu mezenkimal kök hücreler (GK-MKH)
dc.titlePoli(Bütilenadipat-Ko-Tereftalat) (Pbat)-Bazlı Nanotopografik Fibröz Doku İskelelerinin Üretimi ve Hücresel Davranışların İncelenmesitr_TR
dc.typeinfo:eu-repo/semantics/doctoralThesistr_TR
dc.description.ozetSunulan tez çalışmasının amacı doku mühendisliğinde göreceli olarak daha yeni bir polimer olarak kullanım bulan poli(bütilenadipat-ko-tereftalat) (PBAT) temelli ve nanotopografik yüzey özelliklerine sahip fiberlerin ve fibröz matrikslerin kök hücrelerin mekanotransdüksiyon mekanizması ve hücre davranışları üzerindeki etkilerinin incelenmesidir. Nanotopografik fiberler faz ayırım mekanizmalarıyla desteklenen elektroeğirme yöntemiyle üretilmiş, matrikslerin, fiziksel, kimyasal ve morfolojik yapıları karakterize edilmiştir. İnsan göbek kordonu mezenkimal kök hücrelerinin (GK-MKH) matriksler ve tek fiberler ile etkileşimi hücre kültüründe incelenmiştir. Mekanotransdüksiyon mekanizmasının araştırıldığı hücre kültürü çalışmaları kapsamında nanotopografinin yanısıra polimer kimyasal yapısının da etkisini belirlemek üzere ε-polikaprolakton (PCL) nanotopografik tek fiberler PBAT tek fiberler ile karşılaştırmalı olarak incelenmiştir. Nanotopografik morfolojilere sahip fiberleri oluşturmak için kötü çözücüyle indüklenen faz ayrılması (NIPS), buharla indüklenen faz ayrılması (VIPS), nefes şekilleri (BF) ve termal olarak indüklenmiş faz ayrılması (TIPS) mekanizmaları kullanılmıştır. PBAT için, tetrahidrofuran (THF), diklorometan (DCM), 1,1,1,3,3,3-hekzafloro-2-propanol (HFIP) çözücüleri iyi çözücü olarak, dimetilsülfoksit (DMSO) çözücüsü kötü çözücü olarak seçilmiştir. İkili bileşimde THF çözücüsü DMSO ile, DCM çözücüsü HFIP ile eşleştirilmiştir. THF/DMSO grubu için polimer konsantrasyonu % 12 (w/v), çözücü hacim oranları 9/1 (v/v) olarak, DCM/HFIP grubu için ise polimer konsantrasyonu % 10 (w/v), çözücülerin hacim oranları ise 8/2 (v/v) olarak belirlenmiştir. Bu bileşimler sonucu üretilen fiberlerin gözenekli, buruşuk ve oluklu morfolojide oldukları, HFIP çözücüsü kullanılan gruplardaki fiberlerin ise pürüzsüz morfolojide oldukları, taramalı elektron mikroskobu (SEM) ile belirlenmiştir. Ortalama fiber çapları SEM görüntülerinden hesaplanmıştır. Gelişigüzel ve hizalanmış formülasyonlar için ortalama çap değerleri 2141 ± 860 nm ve 867 ± 487 nm arasında değişmiştir. İki farklı yüzey nanotopografisine sahip PBAT doku iskelerinin (THF/DMSO-buruşuk ve HFIP-pürüzsüz) biyolojik performansları 14 gün boyunca araştırılmıştır. Hücre kültür çalışmaları kapsamında GK-MKH’lerin bu iskeleler üzerindeki morfolojileri, tutunma, çoğalma davranışları; SEM, F-aktin/DAPI immünofloresan boyama (ICC), Alizarin Red boyama ve MTT analizleri ile incelenmiştir. Analiz sonuçlarından, buruşuk nanotopografideki iskeleler üzerindeki hücrelerin tutunma-yayılma davranışının daha belirgin olduğu ve mineralizasyonun daha yoğun olduğu tespit edilmiştir. Ayrıca bu iskelelerde, osteojenik farklılaşmayı temsil eden belirteçler olan RUNX2, OPN ve OCN için bağıl gen ifadelerinin istatistiksel olarak daha yüksek bir ekspresyon seviyesine ulaştığı RT-PCR analiz sonuçlarından görülmüştür. Çalışmanın mekanotransdüksiyon çalışmaları kapsamında, PBAT ve PCL tek fiberler kendi bazal membranları üzerine faz ayırım destekli elektroeğirme yöntemiyle desenlenmiştir. GK-MKH’lerin polimerik tek fiberlerin nanotopografilerine verdikleri cevap F-aktin/DAPI, fibronektin ve integrin ICC boyamaları ile ortaya konulmuştur. Mekanotransdüksiyon mekanizmasında önemli bir rol oynayan YAP (Yes ile ilişkili protein)’ın görüntülenmesi için ICC boyamaları gerçekleştirilmiştir. ImageJ-FIJI yazılımı ile örneklerin floresan görüntülerinden çekirdek ve sitoplazma boy/en oranları; YAP sinyal oranları ve integrin-fibronektin alanları için sayısal veriler elde edilmiştir. Elde edilen analiz sonuçları istatistiksel olarak karşılaştırılmıştır. Bu aşamada elde edilen bulgular sonucunda, PBAT-bazlı buruşuk nanotopografik yüzeylerde kuvvetli hücre-yüzey etkileşimine bağlı lamellipodia yapılarının belirginleşmesi, integrin ve fibronektin miktarının artması ve özellikle YAP’ın sitoplazmadan çekirdeğe geçişi belirgin bir şekilde gözlenmiştir. Bu durum aktin boyama ve çekirdeğin daha büyük boy/en oranı vermesi ile desteklenmiştir. Çalışmada kullanılan pürüzsüz fiberlerde hücrelerin daha az uzama ve yayılma gösterdiği, hücre iskeletinin çoğunlukla çekirdek etrafında lokalize olduğu görülmüştür. Çalışma kapsamında elde edilen PBAT-bazlı fiber yapılardaki morfolojik değişimlerin ve kimyasal yapının sinerjik etkisi ile hücre tutunma, yayılma gibi pek çok hücresel fonksiyonun daha etkin bir şekilde indüklendiği görülmüştür. Hücresel aktiviteler ve mekanotransdüksiyon üzerinde en etkili olan polimerik yapı PBAT ve en iyi morfoloji de buruşuk nanotopografi olarak belirlenmiştir. Elde edilen bulguların klinik çalışmalarda kullanılabilecek, 3B nanofibröz iskelelerin tasarımına, mekanotransdüksiyonla ilişkili konularda ilgili literatüre ve uygulamalara katkı sağlaması beklenmektedir.tr_TR
dc.contributor.departmentBiyomühendisliktr_TR
dc.embargo.terms6 aytr_TR
dc.embargo.lift2025-03-18T12:38:10Z
dc.fundingYoktr_TR


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